The Complete Mitochondrial Genome of the Fourhorn Sculpin Triglopsis quadricornis (Perciformes,  Cottidae) from Sirius Passet,  North Greenland

Bo-Mi Kim, Ji-Hoon Kihm, and Tae-Yoon S. Park

doi:10.4217/OPR.2021.43.4.371

All Issue

2021 Vol.43, Issue 4 Preview Page

Data

The Complete Mitochondrial Genome of the Fourhorn Sculpin Triglopsis quadricornis (Perciformes, Cottidae) from Sirius Passet, North Greenland

30 December 2021. pp. 371-374

PDF XML

Abstract

Triglopsis quadricornis Linnaeus, 1758 (Cottidae) is distributed in the Atlantic and Arctic and has four unique bony protuberances on its head. Here, we report the complete, circular, and annotated mitochondrial genome of T. quadricornis. The complete T. quadricornis mitochondrion was sequenced by high-throughput Illumina HiSeq platform. The sequences are 16,736 bp in size and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, a control region, and large and small ribosomal subunits. The overall genomic structure of T. quadricornis mitochondrion was conserved with the gene arrangement of Megalocottus and Myoxocephalus species, and phylogenetic analysis supports their sister relationships. Most PCGs consist of TAA or TAG as a termination codon, whereas COII, ND4, and CYTB have T-- as a stop codon. This complete mitochondrial DNA information of T. quadricornis will provide an essential genomic resource to elucidate the phylogenetic relationship and evolutionary history of the family Cottidae.

Keywords

Triglopsis quadricornis

Greenland fish

Cottidae

mitogenome

phylogeny

References

Balakirev ES, Kravchenko AY, Cherepkova EV, Saveliev PA, Semenchenko AA, Ayala FJ (2020a) Complete mitochondrial genome of the Belligerent sculpin Megalocottus platycephalus (Cottoidei: Cottidae). Mitochondrial DNA B Resour 4: 2980-2981 10.1080/23802359.2019.166434833365819PMC7706993

Balakirev ES, Kravchenko AY, Semenchenko AA (2020b) Genetic evidence for a mixed composition of the genus Myoxocephalus (Cottoidei: Cottidae) necessitates generic realignment. Genes 11:1071 10.3390/genes1109107132933022PMC7564937

Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455-477 10.1089/cmb.2012.002122506599PMC3342519

Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF (2013) MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol 69:313-319 10.1016/j.ympev.2012.08.02322982435

Ceruso C, Venuti I, Osca D, Caputi L, Anastasio A, Crocetta F, Sordino P, Pepe T (2020) The complete mitochondrial genome of the sharpsnout seabream Diplodus puntazzo (Perciformes: Sparidae). Mitochondrial DNA B Resour 5: 2379-2381 10.1080/23802359.2020.177550933457799PMC7782139

COSEWIC (2003) COSEWIC assessment and update status report on the fourhorn sculpin Myoxocephalus quadricornis (freshwater form) in Canada. Committee on the Status of Endangered Wildlife in Canada, Ottawa, 24 p

Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772 10.1038/nmeth.210922847109PMC4594756

Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704 10.1080/1063515039023552014530136

Johannesen E, Høines ÅS, Dolgov AV, Fossheim M (2012) Demersal fish assemblages and spatial diversity patterns in the Arctic-Atlantic transition zone in the Barents Sea. PLoS ONE 7:34924. doi:10.1371/journal.pone.0034924 10.1371/journal.pone.003492422545093PMC3328492

Lee WY (2018) Bird observations in Sirius Passet, North Greenland, 2016 and 2017. Dansk Orn Foren Tidsskr 112:53-58

Li Y, Song P, Feng J, Zhang N, Zhang R, Lin L (2018) Complete mitochondrial genome sequence and phylogenetic analysis of Myoxocephalus scorpius (Linnaeus, 1758). Mitochondrial DNA B Resour 4:862-863 10.1080/23802359.2019.1573111

Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964 10.1093/nar/25.5.9559023104PMC146525

Mascolo C, Ceruso M, Chirollo C, Palma G, Anastasio A, Sordino P, Pepe T (2019) The complete mitochondrial genome of the Angolan dentex Dentex angolensis (Perciformes: Sparidae). Mitochondrial DNA B Resour 4:1245-1246 10.1080/23802359.2019.1591248

Nelson JS (2006) Fishes of the world. John Wiley & Sons, Inc., New Jersey, 752 p

Rooney N, McCann K, Gellner G, Moore JC (2006) Structural asymmetry and the stability of diverse food webs. Nature 442:265-269 10.1038/nature0488716855582

Walsh JE (2008) Climate of the arctic marine environment. Ecol Appl 18:3-22 10.1890/06-0503.118494360

Information

Publisher :Korea Institute of Ocean Science and Technology
Publisher(Ko) :한국해양과학기술원
Journal Title :Ocean and Polar Research
Journal Title(Ko) :Ocean and Polar Research
Volume : 43
No :4
Pages :371-374
Received Date :2021. 07. 20
Revised Date :2021. 10. 08
Accepted Date : 2021. 10. 12
DOI :https://doi.org/10.4217/OPR.2021.43.4.371

Ocean and Polar Research ISSN:1598-141X(Print) 2234-7313(Online) Ocean and Polar Research

All Issue